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Faculty of Law

• Institute of Law and Technology

Faculty of Medicine

Dean: Martin Repko

• Department of Anatomy
• Department of Biochemistry
• Department of Biophysics
• Department of Biology
• Department of Histology and Embryology
• Department of Medical Psychology and Ethics
• Department of Pathological Physiology
• Department of Pathology
• Department of Pharmacology and Toxicology
• Department of Physiology
• Institute of Medical Genetics and Genomics
• Institute of Palliative Care
• Institute of Physiotherapy
• Institute of Laboratory Methods
• Institute of Optometry and Orthoptics
• Institute of Healthcare Sciences
• Joint facilities with St. Anne's University Hospital (anesthesiology, dermatology, surgery, cardiology, neurology, orthopedics, pathology, otolaryngology, dental clinics)
• Joint facilities with Bohunice Hospital (gastroenterology, hematology-oncology, pediatric gynecology, infectious diseases, pulmonology, psychiatry)
• Joint facilities with Children's Hospital (pediatric ophthalmology, pediatric surgery, pediatric neurology, pediatric oncology)

Faculty of Science

Dean: Luděk Bláha

• Geographic Institute
• National Centre for Biomolecular Research
• RECETOX Institute
• Institute of Anthropology
• Institute of Biochemistry
• Institute of Botany and Zoology
• Institute of Experimental Biology
• Institute of Physics and Plasma Technology
• Institute of Condensed Matter Physics
• Institute of Geological Sciences
• Institute of Chemistry
• Institute of Mathematics and Statistics
• Institute of Theoretical Physics and Astrophysics
• Institute of Earth Physics
• Botanical Garden

Faculty of Arts

• Center for Asian Studies
• Historical Institute
• Psychological Institute
• Institute of Archaeology and Museology
• Institute of Czech Literature
• Institute of Czech Language
• Institute of European Ethnology
• Institute of Film and Audiovisual Culture
• Institute of Musicology
• Institute of Linguistics and Baltic Studies
• Institute of Classical Studies
• Institute of Auxiliary Historical Sciences and Archival Studies
• Institute of Religious Studies
• Institute of Slavic Studies
• Institute of Romance Languages and Literatures
• Institute of Germanic, Nordic and Netherlandic Studies
• Department of Anglistics and American Studies
• Department of Theatre Studies
• Department of Philosophy
• Department of Information Studies and Library Science
• Seminar of Art History
• Seminar of Aesthetics

Faculty of Education

• Institute of Research in Inclusive Education
• Institute of Research in School Education
• Department of English Language and Literature
• Department of Biology
• Department of Czech Language and Literature
• Department of Other Foreign Languages
• Department of French Language and Literature
• Department of Physics, Chemistry and Vocational Education
• Department of Geography
• Department of History
• Department of Music Education
• Department of Mathematics
• Department of German Language and Literature
• Department of Civic Education
• Department of Pedagogy
• Department of Pre-primary and Primary Pedagogy
• Department of Psychology
• Department of Social Pedagogy
• Department of Special and Inclusive Pedagogy
• Department of Technical and Information Education
• Department of Physical Education and Health Education
• Department of Art and Creative Activity

Faculty of Pharmacy

• Institute of Applied Pharmacy
• Institute of Pharmaceutical Technology
• Institute of Pharmacology and Toxicology
• Institute of Chemical Medicines
• Institute of Molecular Pharmacy
• Institute of Natural Medicines
• Lifelong Learning Institute
• Dr. Protiva Library

Faculty of Economics and Administration

• Department of Economics
• Department of Finance
• Department of Business Economics and Management
• Department of Regional Economics
• Department of Public Economics
• Division of Applied Mathematics and Informatics
• Division of Legal Education
• Center for Information and Communication Technologies
• Institute for Health Economics, Policy and Innovation
• Institute of Public Administration

Faculty of Informatics

• Multiple research groups and laboratories

Faculty of Social Studies

Dean: Stanislav Balík

• Department of Media Studies and Journalism
• Department of International Relations and European Studies
• Institute for Psychological Research

Faculty of Sports Studies

• Department of Movement Activities and Health
• Department of Sports Performance and Diagnostics
• Department of Physical Education and Social Sciences
• University Sports Center
• Sports Diagnostics Laboratories
• Sports Medicine Clinic